miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|150117399|gb|EE518371.1|EE518371 GAAAGAAGGGGAAGAAGAAACCCTTTGGCTGAGAACGAAGCATCGCGTTTCTTCGATTCCCAATTTCGGTTTTGCGAGAA
ACCCATTTCTCTCTAGTGGAGATCGATGGCGTCGGTGGAGAAGGATCACGAAGGCACCGTGGCTGATACCGGAGATCAGA
ATGATTCCGCCGCCGTACCCTCGGAGACTGTCGGCGGAGGGGAGAAGAAGACGACGACGACGAAGGGTAAGGGTATGTTC
TCGCGAATCTGGAACTGGATATTTAGGGTTAAGGGAGACGACTTCGAGAAGAGGCTGAAAGGGATATCGAAGGAGGAAGC
GACGATCAGATCCAGGATGAAGCGAAGATCGGTCACGAGGAGGAAGCTCATTAGGAATCTAATCGCGTTCTCCGTCTTCT
TTGAGGTGATTGCAGTGAGCTATGCGATTATGACGACTAGAGATGAAGATTTGGATTGGAAGCTGAGGAGTTTCAGGATC
TTGCCTATGTTTCTTTTGCCTGCTCTTTCTTTCCTTACCTATTCTTCTCTCGTTAGCTTCACCAGGATGTGTGACCGC




Most similar to sp|Q9ZQ34|Y2433_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330
           OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1
          Length = 408

 Score =  181 bits (458), Expect = 3e-45
 Identities = 99/152 (65%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
 Frame = +1

Query: 106 MASVEKDHEGTVADTG-DQNDSAAVPSXXXXXXXXXXXXXXXXXMFSRIWNWIFRVKGDD 282
           MA  EK+HEGTV ++G ++NDSA V S                 +FSR+WN IFRV+GDD
Sbjct: 1   MAVGEKEHEGTVVESGGEKNDSAVVLSASGEKKTTKRKG-----LFSRLWNAIFRVRGDD 55

Query: 283 FEKRLKGISKEEATIXXXXXXXXXXXXXLIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWK 462
           FEKRLK ISKEEAT+              IRNLIAFSVFFEVIAVSYAIMTTRDEDLDWK
Sbjct: 56  FEKRLKNISKEEATVRNRMKRRSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWK 115

Query: 463 LRSFRILPMFLLPALSFLTYSSLVSFTRMCDR 558
           LRSFRILPMFLLPA++FL YSSLV F RMCDR
Sbjct: 116 LRSFRILPMFLLPAVAFLLYSSLVGFWRMCDR 147